Running Dask on the cluster with MLrun#

The dask frameworks enables you to parallelize your python code and run it as a distributed process on Iguazio cluster and dramatically accelerate the performance.
In this notebook you’ll learn how to create a dask cluster and then an mlrun function running as a dask client.
It also demonstrates how to run parallelize custom algorithm using Dask Delayed option.

For more information on dask over kubernetes: https://kubernetes.dask.org/en/latest/.

Set up the environment#

# set mlrun api path and artifact path for logging
import mlrun

project = mlrun.get_or_create_project("dask-demo", "./")

> 2023-02-19 07:48:52,191 [info] Created and saved project dask-demo: {'from_template': None, 'overwrite': False, 'context': './', 'save': True}
> 2023-02-19 07:48:52,194 [info] created project dask-demo and saved in MLRun DB

Create and start Dask cluster#

Dask functions can be local (local workers), or remote (use containers in the cluster). In the case of remote you can specify the number of replica (optional) or leave blank for auto-scale.
Use the new_function() to define the Dask cluster and set the desired configuration of that clustered function.

If the dask workers need to access the shared file system, apply a shared volume mount (e.g. via v3io mount).

The Dask function spec has several unique attributes (in addition to the standard job attributes):

.remote — bool, use local or clustered dask
.replicas — number of desired replicas, keep 0 for auto-scale
.min_replicas, .max_replicas — set replicas range for auto-scale
.scheduler_timeout — cluster is killed after timeout (inactivity), default is ‘60 minutes’
.nthreads — number of worker threads

If you want to access the dask dashboard or scheduler from remote you need to use NodePort service type (set .service_type to ‘NodePort’), and the external IP need to be specified in mlrun configuration (mlconf.remote_host). This is set automatically if you are running on an Iguazio cluster.

Specify the kind (dask) and the container image:

# create an mlrun function that will init the dask cluster
dask_cluster_name = "dask-cluster"
dask_cluster = mlrun.new_function(
    dask_cluster_name, kind="dask", image="mlrun/ml-models"
)
dask_cluster.apply(mlrun.mount_v3io())

<mlrun.runtimes.daskjob.DaskCluster at 0x7f0dabf52460>

# set range for # of replicas with replicas and max_replicas
dask_cluster.spec.min_replicas = 1
dask_cluster.spec.max_replicas = 4

# set the use of dask remote cluster (distributed)
dask_cluster.spec.remote = True
dask_cluster.spec.service_type = "NodePort"

# set dask memory and cpu limits
dask_cluster.with_worker_requests(mem="2G", cpu="2")

Initialize the Dask Cluster#

When you request the dask cluster client attribute, it verifies that the cluster is up and running:

# init dask client and use the scheduler address as param in the following cell
dask_cluster.client

> 2023-02-19 07:49:07,462 [info] trying dask client at: tcp://mlrun-dask-cluster-bae5cf76-0.default-tenant:8786
> 2023-02-19 07:49:07,516 [info] using remote dask scheduler (mlrun-dask-cluster-bae5cf76-0) at: tcp://mlrun-dask-cluster-bae5cf76-0.default-tenant:8786

Mismatched versions found

+---------+--------+-----------+---------+
| Package | client | scheduler | workers |
+---------+--------+-----------+---------+
| blosc   | None   | 1.11.1    | None    |
| lz4     | None   | 3.1.10    | None    |
+---------+--------+-----------+---------+

dashboard link: default-tenant.app.vmdev94.lab.iguazeng.com:31886

Client

Client-e3759c00-b029-11ed-86b2-6684fa230d0c

Connection method: Direct
Dashboard: http://mlrun-dask-cluster-bae5cf76-0.default-tenant:8787/status

Scheduler Info

Scheduler

Scheduler-7641adf7-a399-4465-869c-d479318d6835

Comm: tcp://10.200.196.73:8786	Workers: 0
Dashboard: http://10.200.196.73:8787/status	Total threads: 0
Started: Just now	Total memory: 0 B

Workers

Creating a function that runs over Dask#

# mlrun: start-code

Import mlrun and dask. nuclio is only used to convert the code into an mlrun function.

import mlrun

%nuclio config kind = "job"
%nuclio config spec.image = "mlrun/ml-models"

%nuclio: setting kind to 'job'
%nuclio: setting spec.image to 'mlrun/ml-models'

from dask.distributed import Client
from dask import delayed
from dask import dataframe as dd

import warnings
import numpy as np
import os
import mlrun

warnings.filterwarnings("ignore")

python function code#

This simple function reads a .csv file using dask dataframe. It runs the groupby and describe functions on the dataset, and stores the results as a dataset artifact.

def test_dask(
    context, dataset: mlrun.DataItem, client=None, dask_function: str = None
) -> None:

    # setup dask client from the MLRun dask cluster function
    if dask_function:
        client = mlrun.import_function(dask_function).client
    elif not client:
        client = Client()

    # load the dataitem as dask dataframe (dd)
    df = dataset.as_df(df_module=dd)

    # run describe (get statistics for the dataframe) with dask
    df_describe = df.describe().compute()

    # run groupby and count using dask
    df_grpby = df.groupby("VendorID").count().compute()

    context.log_dataset("describe", df=df_grpby, format="csv", index=True)
    return

# mlrun: end-code

Test the function over Dask#

Load sample data#

DATA_URL = "/User/examples/ytrip.csv"

!mkdir -p /User/examples/
!curl -L "https://s3.wasabisys.com/iguazio/data/Taxi/yellow_tripdata_2019-01_subset.csv" > {DATA_URL}

  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 84.9M  100 84.9M    0     0  7136k      0  0:00:12  0:00:12 --:--:-- 6371k

Convert the code to MLRun function#

Use code_to_function to convert the code to MLRun and specify the configuration for the dask process (e.g. replicas, memory etc.).
Note that the resource configurations are per worker.

# mlrun transforms the code above (up to nuclio: end-code cell) into serverless function
# which runs in k8s pods
fn = mlrun.code_to_function("test_dask", kind="job", handler="test_dask").apply(
    mlrun.mount_v3io()
)

Run the function#

# function URI is db://<project>/<name>
dask_uri = f"db://{project.name}/{dask_cluster_name}"

r = fn.run(
    handler=test_dask, inputs={"dataset": DATA_URL}, params={"dask_function": dask_uri}
)

> 2023-02-19 07:49:27,208 [info] starting run test-dask-test_dask uid=a30942af70f347488daf4f653afd6c63 DB=http://mlrun-api:8080
> 2023-02-19 07:49:27,361 [info] Job is running in the background, pod: test-dask-test-dask-dqdln
Names with underscore '_' are about to be deprecated, use dashes '-' instead. Replacing underscores with dashes.
> 2023-02-19 07:49:35,137 [info] trying dask client at: tcp://mlrun-dask-cluster-bae5cf76-0.default-tenant:8786
> 2023-02-19 07:49:35,163 [info] using remote dask scheduler (mlrun-dask-cluster-bae5cf76-0) at: tcp://mlrun-dask-cluster-bae5cf76-0.default-tenant:8786
remote dashboard: default-tenant.app.vmdev94.lab.iguazeng.com:31886
> 2023-02-19 07:49:45,383 [info] To track results use the CLI: {'info_cmd': 'mlrun get run a30942af70f347488daf4f653afd6c63 -p dask-demo', 'logs_cmd': 'mlrun logs a30942af70f347488daf4f653afd6c63 -p dask-demo'}
> 2023-02-19 07:49:45,384 [info] Or click for UI: {'ui_url': 'https://dashboard.default-tenant.app.vmdev94.lab.iguazeng.com/mlprojects/dask-demo/jobs/monitor/a30942af70f347488daf4f653afd6c63/overview'}
> 2023-02-19 07:49:45,384 [info] run executed, status=completed
final state: completed

project	uid	iter	start	state	name	labels	inputs	parameters	results	artifacts
dask-demo	...3afd6c63	0	Feb 19 07:49:35	completed	test-dask-test_dask	v3io_user=dani kind=job owner=dani mlrun/client_version=1.3.0-rc23 mlrun/client_python_version=3.9.16 host=test-dask-test-dask-dqdln	dataset	dask_function=db://dask-demo/dask-cluster		describe

> to track results use the .show() or .logs() methods or click here to open in UI

> 2023-02-19 07:49:45,730 [info] run executed, status=completed

Track the progress in the UI#

You can view the progress and detailed information in the mlrun UI by clicking on the uid above.
To track the dask progress: in the Dask UI click the “dashboard link” above the “client” section.

Running Dask on the cluster with MLrun

Contents